{
  "_id": "6a0f6165acfb0bcc41c5bf01",
  "Package": "myClim",
  "Type": "Package",
  "Title": "Microclimatic Data Processing",
  "Version": "1.5.4",
  "URL": "http://labgis.ibot.cas.cz/myclim/index.html,\nhttps://github.com/ibot-geoecology/myClim",
  "Authors@R": "c(\nperson(\"Matěj\", \"Man\", email = \"Matej.Man@ibot.cas.cz\", role = \"aut\"),\nperson(\"Vojtěch\", \"Kalčík\", email = \"Vojtech.Kalcik@ibot.cas.cz\", role = c(\"aut\", \"cre\")),\nperson(\"Martin\", \"Macek\", email = \"Martin.Macek@ibot.cas.cz\", role = \"aut\"),\nperson(\"Josef\", \"Brůna\", email = \"Josef.Bruna@ibot.cas.cz\", role = \"aut\"),\nperson(\"Lucia\", \"Hederová\", email = \"Lucia.Hederova@ibot.cas.cz\", role = \"aut\"),\nperson(\"Jan\", \"Wild\", email = \"Jan.Wild@ibot.cas.cz\", role = \"aut\"),\nperson(\"Martin\", \"Kopecký\", email = \"Martin.Kopecky@ibot.cas.cz\", role = \"aut\"),\nperson(\"Institute of Botany of the Czech Academy of Sciences\", role = \"cph\"))",
  "Description": "Handling the microclimatic data in R. The 'myClim'\nworkflow begins at the reading data primary from microclimatic\ndataloggers, but can be also reading of meteorological station\ndata from files. Cleaning time step, time zone settings and\nmetadata collecting is the next step of the work flow. With\n'myClim' tools one can crop, join, downscale, and convert\nmicroclimatic data formats, sort them into localities, request\ndescriptive characteristics and compute microclimatic\nvariables. Handy plotting functions are provided with smart\ndefaults.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "Roxygen": "list(markdown = TRUE)",
  "Additional_repositories": "https://ibot-geoecology.github.io/drat",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev make\nlibicu-dev libuv1-dev libssl-dev",
  "Repository": "https://ibot-geoecology.r-universe.dev",
  "Date/Publication": "2026-03-03 10:57:05 UTC",
  "RemoteUrl": "https://github.com/ibot-geoecology/myclim",
  "RemoteRef": "HEAD",
  "RemoteSha": "45e0bd67684ea97426477fbc9e85d672acb95259",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 10:45:13 UTC",
    "User": "root"
  },
  "Author": "Matěj Man [aut],\nVojtěch Kalčík [aut, cre],\nMartin Macek [aut],\nJosef Brůna [aut],\nLucia Hederová [aut],\nJan Wild [aut],\nMartin Kopecký [aut],\nInstitute of Botany of the Czech Academy of Sciences [cph]",
  "Maintainer": "Vojtěch Kalčík <Vojtech.Kalcik@ibot.cas.cz>",
  "MD5sum": "f60c35556d80e6d599b99b9ed91a021e",
  "_user": "ibot-geoecology",
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  "_created": "2026-05-21T10:45:13.000Z",
  "_published": "2026-05-21T19:47:49.325Z",
  "_distro": "noble",
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    "name": "Vojtěch Kalčík",
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  "_dependencies": [
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      "package": "stringr",
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    {
      "package": "lubridate",
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      "package": "tibble",
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      "package": "dplyr",
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      "package": "purrr",
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      "package": "tidyr",
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      "package": "ggplot2",
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    {
      "package": "ggforce",
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      "package": "plotly",
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    {
      "package": "zoo",
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    {
      "package": "methods",
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    {
      "package": "vroom",
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    {
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    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
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  "_owner": "ibot-geoecology",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
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    },
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    {
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  "_stars": 8,
  "_contributors": [
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      "uuid": 2456722
    },
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  "_userbio": {
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    "type": "organization",
    "name": "Department of Geoecology Institute of Botany of the CAS"
  },
  "_downloads": {
    "count": 648,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/myClim"
  },
  "_devurl": "https://github.com/ibot-geoecology/myclim",
  "_searchresults": 35,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/myClim.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ibot-geoecology/myclim",
  "_realowner": "ibot-geoecology",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.1",
      "date": "2023-05-08"
    },
    {
      "version": "1.0.12",
      "date": "2023-11-16"
    },
    {
      "version": "1.1.0",
      "date": "2024-02-16"
    },
    {
      "version": "1.2.0",
      "date": "2024-08-21"
    },
    {
      "version": "1.3.0",
      "date": "2024-10-21"
    },
    {
      "version": "1.4.0",
      "date": "2025-02-21"
    },
    {
      "version": "1.5.0",
      "date": "2025-10-03"
    },
    {
      "version": "1.5.1",
      "date": "2026-01-07"
    }
  ],
  "_exports": [
    "mc_agg",
    "mc_calc_cumsum",
    "mc_calc_fdd",
    "mc_calc_gdd",
    "mc_calc_snow",
    "mc_calc_snow_agg",
    "mc_calc_tomst_dendro",
    "mc_calc_vpd",
    "mc_calc_vwc",
    "mc_calib_moisture",
    "mc_const_CALIB_MOIST_ACOR_T",
    "mc_const_CALIB_MOIST_REF_T",
    "mc_const_CALIB_MOIST_WCOR_T",
    "mc_const_SENSOR_count",
    "mc_const_SENSOR_coverage",
    "mc_const_SENSOR_dendro_l_um",
    "mc_const_SENSOR_Dendro_raw",
    "mc_const_SENSOR_Dendro_T",
    "mc_const_SENSOR_FDD",
    "mc_const_SENSOR_GDD",
    "mc_const_SENSOR_HOBO_EXTT",
    "mc_const_SENSOR_HOBO_RH",
    "mc_const_SENSOR_HOBO_T",
    "mc_const_SENSOR_integer",
    "mc_const_SENSOR_logical",
    "mc_const_SENSOR_precipitation",
    "mc_const_SENSOR_QTi_PPFD",
    "mc_const_SENSOR_QTi_T",
    "mc_const_SENSOR_real",
    "mc_const_SENSOR_RH",
    "mc_const_SENSOR_snow_bool",
    "mc_const_SENSOR_snow_fresh",
    "mc_const_SENSOR_snow_total",
    "mc_const_SENSOR_SP1_SWP",
    "mc_const_SENSOR_SP1_T",
    "mc_const_SENSOR_sun_shine",
    "mc_const_SENSOR_T_C",
    "mc_const_SENSOR_TH2_RH",
    "mc_const_SENSOR_TH2_T",
    "mc_const_SENSOR_Thermo_T",
    "mc_const_SENSOR_TMS_moist",
    "mc_const_SENSOR_TMS_T1",
    "mc_const_SENSOR_TMS_T2",
    "mc_const_SENSOR_TMS_T3",
    "mc_const_SENSOR_VPD",
    "mc_const_SENSOR_VWC",
    "mc_const_SENSOR_wind_speed",
    "mc_env_moist",
    "mc_env_temp",
    "mc_env_vpd",
    "mc_filter",
    "mc_info",
    "mc_info_calib",
    "mc_info_clean",
    "mc_info_count",
    "mc_info_logger",
    "mc_info_meta",
    "mc_info_range",
    "mc_info_states",
    "mc_join",
    "mc_load",
    "mc_plot_image",
    "mc_plot_line",
    "mc_plot_loggers",
    "mc_plot_raster",
    "mc_prep_calib",
    "mc_prep_calib_load",
    "mc_prep_clean",
    "mc_prep_crop",
    "mc_prep_delete",
    "mc_prep_expandtime",
    "mc_prep_fillNA",
    "mc_prep_merge",
    "mc_prep_meta_locality",
    "mc_prep_meta_sensor",
    "mc_prep_solar_tz",
    "mc_prep_TMSoffsoil",
    "mc_prep_trim",
    "mc_read_data",
    "mc_read_files",
    "mc_read_long",
    "mc_read_problems",
    "mc_read_tubedb",
    "mc_read_wide",
    "mc_reshape_long",
    "mc_reshape_wide",
    "mc_save",
    "mc_save_localities",
    "mc_states_delete",
    "mc_states_from_sensor",
    "mc_states_insert",
    "mc_states_join",
    "mc_states_outlier",
    "mc_states_replace",
    "mc_states_to_sensor",
    "mc_states_update",
    "myClimList"
  ],
  "_datasets": [
    {
      "name": "mc_data_example_agg",
      "title": "Example data in Agg-format.",
      "object": "mc_data_example_agg",
      "class": [
        "myClimList",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mc_data_example_clean",
      "title": "Example cleaned data in Raw-format.",
      "object": "mc_data_example_clean",
      "class": [
        "myClimList",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mc_data_example_raw",
      "title": "Example data in Raw-format",
      "object": "mc_data_example_raw",
      "class": [
        "myClimList",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mc_data_formats",
      "title": "Formats of source data files",
      "object": "mc_data_formats",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mc_data_heights",
      "title": "Default heights of sensors",
      "object": "mc_data_heights",
      "class": [
        "data.frame"
      ],
      "fields": [
        "logger_type",
        "sensor_name",
        "height",
        "suffix"
      ],
      "rows": 21,
      "table": true,
      "tojson": true
    },
    {
      "name": "mc_data_physical",
      "title": "Physical quantities definition",
      "object": "mc_data_physical",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mc_data_sensors",
      "title": "Sensors definition.",
      "object": "mc_data_sensors",
      "class": [
        "environment"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mc_data_vwc_parameters",
      "title": "Volumetric water content parameters",
      "object": "mc_data_vwc_parameters",
      "class": [
        "data.frame"
      ],
      "fields": [
        "soiltype",
        "a",
        "b",
        "c",
        "rho",
        "clay",
        "silt",
        "sand",
        "ref"
      ],
      "rows": 13,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "sub-.myClimList",
      "title": "Extract localities with []",
      "topics": [
        "[.myClimList"
      ]
    },
    {
      "page": "length.myClimList",
      "title": "Length function for myClim object",
      "topics": [
        "length.myClimList"
      ]
    },
    {
      "page": "mc_agg",
      "title": "Aggregate data by function",
      "topics": [
        "mc_agg"
      ]
    },
    {
      "page": "mc_calc_cumsum",
      "title": "Cumulative sum",
      "topics": [
        "mc_calc_cumsum"
      ]
    },
    {
      "page": "mc_calc_fdd",
      "title": "Freezing Degree Days",
      "topics": [
        "mc_calc_fdd"
      ]
    },
    {
      "page": "mc_calc_gdd",
      "title": "Growing Degree Days",
      "topics": [
        "mc_calc_gdd"
      ]
    },
    {
      "page": "mc_calc_snow",
      "title": "Snow detection from temperature",
      "topics": [
        "mc_calc_snow"
      ]
    },
    {
      "page": "mc_calc_snow_agg",
      "title": "Summary of TRUE/FALSE snow sensor",
      "topics": [
        "mc_calc_snow_agg"
      ]
    },
    {
      "page": "mc_calc_tomst_dendro",
      "title": "Converting Tomst dendrometer values to micrometers",
      "topics": [
        "mc_calc_tomst_dendro"
      ]
    },
    {
      "page": "mc_calc_vpd",
      "title": "Calculate vapor pressure deficit (in kPa)",
      "topics": [
        "mc_calc_vpd"
      ]
    },
    {
      "page": "mc_calc_vwc",
      "title": "Conversion of raw TMS soil moisture values to volumetric water content (VWC)",
      "topics": [
        "mc_calc_vwc"
      ]
    },
    {
      "page": "mc_calib_moisture",
      "title": "Calculates coefficients for TMS moisture conversion to VWC",
      "topics": [
        "mc_calib_moisture"
      ]
    },
    {
      "page": "mc_const_CALIB_MOIST_ACOR_T",
      "title": "Default temperature drift for TMS moisture in the air.",
      "topics": [
        "mc_const_CALIB_MOIST_ACOR_T"
      ]
    },
    {
      "page": "mc_const_CALIB_MOIST_REF_T",
      "title": "Default ref. temperate for TMS moisture calibration",
      "topics": [
        "mc_const_CALIB_MOIST_REF_T"
      ]
    },
    {
      "page": "mc_const_CALIB_MOIST_WCOR_T",
      "title": "Default temperature drift for TMS moisture in the water",
      "topics": [
        "mc_const_CALIB_MOIST_WCOR_T"
      ]
    },
    {
      "page": "mc_const_SENSOR_count",
      "title": "Count sensor id see 'mc_agg()'",
      "topics": [
        "mc_const_SENSOR_count"
      ]
    },
    {
      "page": "mc_const_SENSOR_coverage",
      "title": "Coverage sensor id see 'mc_agg()'",
      "topics": [
        "mc_const_SENSOR_coverage"
      ]
    },
    {
      "page": "mc_const_SENSOR_dendro_l_um",
      "title": "Radius difference sensor id",
      "topics": [
        "mc_const_SENSOR_dendro_l_um"
      ]
    },
    {
      "page": "mc_const_SENSOR_Dendro_raw",
      "title": "Default sensor for TOMST Dendrometer radius difference",
      "topics": [
        "mc_const_SENSOR_Dendro_raw"
      ]
    },
    {
      "page": "mc_const_SENSOR_Dendro_T",
      "title": "Default sensor for TOMST Dendrometer temperature",
      "topics": [
        "mc_const_SENSOR_Dendro_T"
      ]
    },
    {
      "page": "mc_const_SENSOR_FDD",
      "title": "Freezing Degree Days sensor id see 'mc_calc_fdd()'",
      "topics": [
        "mc_const_SENSOR_FDD"
      ]
    },
    {
      "page": "mc_const_SENSOR_GDD",
      "title": "Growing Degree Days sensor id see 'mc_calc_gdd()'",
      "topics": [
        "mc_const_SENSOR_GDD"
      ]
    },
    {
      "page": "mc_const_SENSOR_HOBO_EXTT",
      "title": "Onset HOBO external temperature sensor id",
      "topics": [
        "mc_const_SENSOR_HOBO_EXTT"
      ]
    },
    {
      "page": "mc_const_SENSOR_HOBO_RH",
      "title": "Onset HOBO humidity sensor id",
      "topics": [
        "mc_const_SENSOR_HOBO_RH"
      ]
    },
    {
      "page": "mc_const_SENSOR_HOBO_T",
      "title": "Onset HOBO temperature sensor id",
      "topics": [
        "mc_const_SENSOR_HOBO_T"
      ]
    },
    {
      "page": "mc_const_SENSOR_integer",
      "title": "General integer sensor id",
      "topics": [
        "mc_const_SENSOR_integer"
      ]
    },
    {
      "page": "mc_const_SENSOR_logical",
      "title": "General logical sensor id",
      "topics": [
        "mc_const_SENSOR_logical"
      ]
    },
    {
      "page": "mc_const_SENSOR_precipitation",
      "title": "Precipitation sensor id",
      "topics": [
        "mc_const_SENSOR_precipitation"
      ]
    },
    {
      "page": "mc_const_SENSOR_QTi_PPFD",
      "title": "EMS Minikin QTi PPFD sensor id",
      "topics": [
        "mc_const_SENSOR_QTi_PPFD"
      ]
    },
    {
      "page": "mc_const_SENSOR_QTi_T",
      "title": "EMS Minikin QTi temperature sensor id",
      "topics": [
        "mc_const_SENSOR_QTi_T"
      ]
    },
    {
      "page": "mc_const_SENSOR_real",
      "title": "General real sensor id",
      "topics": [
        "mc_const_SENSOR_real"
      ]
    },
    {
      "page": "mc_const_SENSOR_RH",
      "title": "Relative humidity sensor id",
      "topics": [
        "mc_const_SENSOR_RH"
      ]
    },
    {
      "page": "mc_const_SENSOR_snow_bool",
      "title": "Snow existence sensor id see 'mc_calc_snow()'",
      "topics": [
        "mc_const_SENSOR_snow_bool"
      ]
    },
    {
      "page": "mc_const_SENSOR_snow_fresh",
      "title": "Height of newly fallen snow sensor id",
      "topics": [
        "mc_const_SENSOR_snow_fresh"
      ]
    },
    {
      "page": "mc_const_SENSOR_snow_total",
      "title": "Height snow sensor id",
      "topics": [
        "mc_const_SENSOR_snow_total"
      ]
    },
    {
      "page": "mc_const_SENSOR_SP1_SWP",
      "title": "EMS Minikin SP1 SWP sensor id",
      "topics": [
        "mc_const_SENSOR_SP1_SWP"
      ]
    },
    {
      "page": "mc_const_SENSOR_SP1_T",
      "title": "EMS Minikin SP1 temperature sensor id",
      "topics": [
        "mc_const_SENSOR_SP1_T"
      ]
    },
    {
      "page": "mc_const_SENSOR_sun_shine",
      "title": "Time of sun shine sensor id",
      "topics": [
        "mc_const_SENSOR_sun_shine"
      ]
    },
    {
      "page": "mc_const_SENSOR_T_C",
      "title": "Temperature sensor id",
      "topics": [
        "mc_const_SENSOR_T_C"
      ]
    },
    {
      "page": "mc_const_SENSOR_TH2_RH",
      "title": "EMS Minikin TH2 RH sensor id",
      "topics": [
        "mc_const_SENSOR_TH2_RH"
      ]
    },
    {
      "page": "mc_const_SENSOR_TH2_T",
      "title": "EMS Minikin TH2 temperature sensor id",
      "topics": [
        "mc_const_SENSOR_TH2_T"
      ]
    },
    {
      "page": "mc_const_SENSOR_Thermo_T",
      "title": "Default sensor for TOMST Thermologger temperature",
      "topics": [
        "mc_const_SENSOR_Thermo_T"
      ]
    },
    {
      "page": "mc_const_SENSOR_TMS_moist",
      "title": "Default sensor for TOMST TMS raw soil moisture",
      "topics": [
        "mc_const_SENSOR_TMS_moist"
      ]
    },
    {
      "page": "mc_const_SENSOR_TMS_T1",
      "title": "Default sensor for TOMST TMS soil temperature",
      "topics": [
        "mc_const_SENSOR_TMS_T1"
      ]
    },
    {
      "page": "mc_const_SENSOR_TMS_T2",
      "title": "Default sensor for TOMST TMS temperature of soil surface",
      "topics": [
        "mc_const_SENSOR_TMS_T2"
      ]
    },
    {
      "page": "mc_const_SENSOR_TMS_T3",
      "title": "Default sensor for TOMST TMS air temperature",
      "topics": [
        "mc_const_SENSOR_TMS_T3"
      ]
    },
    {
      "page": "mc_const_SENSOR_VPD",
      "title": "Vapor Pressure Deficit sensor id see 'mc_calc_vpd()'",
      "topics": [
        "mc_const_SENSOR_VPD"
      ]
    },
    {
      "page": "mc_const_SENSOR_VWC",
      "title": "Volumetric soil moisture sensor id see 'mc_calc_vwc()'",
      "topics": [
        "mc_const_SENSOR_VWC"
      ]
    },
    {
      "page": "mc_const_SENSOR_wind_speed",
      "title": "Speed of wind sensor id",
      "topics": [
        "mc_const_SENSOR_wind_speed"
      ]
    },
    {
      "page": "mc_data_example_agg",
      "title": "Example data in Agg-format.",
      "topics": [
        "mc_data_example_agg"
      ]
    },
    {
      "page": "mc_data_example_clean",
      "title": "Example cleaned data in Raw-format.",
      "topics": [
        "mc_data_example_clean"
      ]
    },
    {
      "page": "mc_data_example_raw",
      "title": "Example data in Raw-format",
      "topics": [
        "mc_data_example_raw"
      ]
    },
    {
      "page": "mc_data_formats",
      "title": "Formats of source data files",
      "topics": [
        "mc_data_formats"
      ]
    },
    {
      "page": "mc_data_heights",
      "title": "Default heights of sensors",
      "topics": [
        "mc_data_heights"
      ]
    },
    {
      "page": "mc_data_physical",
      "title": "Physical quantities definition",
      "topics": [
        "mc_data_physical"
      ]
    },
    {
      "page": "mc_data_sensors",
      "title": "Sensors definition.",
      "topics": [
        "mc_data_sensors"
      ]
    },
    {
      "page": "mc_data_vwc_parameters",
      "title": "Volumetric water content parameters",
      "topics": [
        "mc_data_vwc_parameters"
      ]
    },
    {
      "page": "mc_DataFormat-class",
      "title": "Class for Logger File Data Format",
      "topics": [
        "mc_DataFormat",
        "mc_DataFormat-class"
      ]
    },
    {
      "page": "mc_EMSDataFormat-class",
      "title": "Class for reading EMS Brno logger files",
      "topics": [
        "mc_EMSDataFormat",
        "mc_EMSDataFormat-class"
      ]
    },
    {
      "page": "mc_env_moist",
      "title": "Standardised myClim soil moisture variables",
      "topics": [
        "mc_env_moist"
      ]
    },
    {
      "page": "mc_env_temp",
      "title": "Standardised myClim temperature variables",
      "topics": [
        "mc_env_temp"
      ]
    },
    {
      "page": "mc_env_vpd",
      "title": "Standardised myClim vapor pressure deficit variables",
      "topics": [
        "mc_env_vpd"
      ]
    },
    {
      "page": "mc_filter",
      "title": "Filter data from myClim object",
      "topics": [
        "mc_filter"
      ]
    },
    {
      "page": "mc_HOBODataFormat-class",
      "title": "Class for reading HOBO logger files",
      "topics": [
        "mc_HOBODataFormat",
        "mc_HOBODataFormat-class"
      ]
    },
    {
      "page": "mc_info",
      "title": "Get sensors info table",
      "topics": [
        "mc_info"
      ]
    },
    {
      "page": "mc_info_calib",
      "title": "Get calibration info table",
      "topics": [
        "mc_info_calib"
      ]
    },
    {
      "page": "mc_info_clean",
      "title": "Call cleaning log",
      "topics": [
        "mc_info_clean"
      ]
    },
    {
      "page": "mc_info_count",
      "title": "Count data",
      "topics": [
        "mc_info_count"
      ]
    },
    {
      "page": "mc_info_logger",
      "title": "Get loggers info table",
      "topics": [
        "mc_info_logger"
      ]
    },
    {
      "page": "mc_info_meta",
      "title": "Get localities metadata table",
      "topics": [
        "mc_info_meta"
      ]
    },
    {
      "page": "mc_info_range",
      "title": "Get table of sensors range",
      "topics": [
        "mc_info_range"
      ]
    },
    {
      "page": "mc_info_states",
      "title": "Get states (tags) info table",
      "topics": [
        "mc_info_states"
      ]
    },
    {
      "page": "mc_join",
      "title": "Joining time-series from repeated downloads",
      "topics": [
        "mc_join"
      ]
    },
    {
      "page": "mc_load",
      "title": "Load myClim object",
      "topics": [
        "mc_load"
      ]
    },
    {
      "page": "mc_LocalityMetadata-class",
      "title": "Class for locality metadata",
      "topics": [
        "mc_LocalityMetadata",
        "mc_LocalityMetadata-class"
      ]
    },
    {
      "page": "mc_LoggerCleanInfo-class",
      "title": "Class for logger clean info",
      "topics": [
        "mc_LoggerCleanInfo",
        "mc_LoggerCleanInfo-class"
      ]
    },
    {
      "page": "mc_LoggerMetadata-class",
      "title": "Class for logger metadata",
      "topics": [
        "mc_LoggerMetadata",
        "mc_LoggerMetadata-class"
      ]
    },
    {
      "page": "mc_MainMetadata-class",
      "title": "Class for myClim object metadata",
      "topics": [
        "mc_MainMetadata",
        "mc_MainMetadata-class"
      ]
    },
    {
      "page": "mc_MainMetadataAgg-class",
      "title": "Class for myClim object metadata in Agg-format",
      "topics": [
        "mc_MainMetadataAgg",
        "mc_MainMetadataAgg-class"
      ]
    },
    {
      "page": "mc_Physical-class",
      "title": "Class for physical",
      "topics": [
        "mc_Physical",
        "mc_Physical-class"
      ]
    },
    {
      "page": "mc_plot_image",
      "title": "Plot data - image",
      "topics": [
        "mc_plot_image"
      ]
    },
    {
      "page": "mc_plot_line",
      "title": "Plot data - ggplot2 geom_line",
      "topics": [
        "mc_plot_line"
      ]
    },
    {
      "page": "mc_plot_loggers",
      "title": "Plot data from loggers",
      "topics": [
        "mc_plot_loggers"
      ]
    },
    {
      "page": "mc_plot_raster",
      "title": "Plot data - ggplot2 geom_raster",
      "topics": [
        "mc_plot_raster"
      ]
    },
    {
      "page": "mc_prep_calib",
      "title": "Sensors calibration",
      "topics": [
        "mc_prep_calib"
      ]
    },
    {
      "page": "mc_prep_calib_load",
      "title": "Load sensor calibration parameters to correct microclimatic records",
      "topics": [
        "mc_prep_calib_load"
      ]
    },
    {
      "page": "mc_prep_clean",
      "title": "Cleaning datetime series",
      "topics": [
        "mc_prep_clean"
      ]
    },
    {
      "page": "mc_prep_crop",
      "title": "Crop datetime",
      "topics": [
        "mc_prep_crop"
      ]
    },
    {
      "page": "mc_prep_delete",
      "title": "Delete values by index",
      "topics": [
        "mc_prep_delete"
      ]
    },
    {
      "page": "mc_prep_expandtime",
      "title": "Expand time steps",
      "topics": [
        "mc_prep_expandtime"
      ]
    },
    {
      "page": "mc_prep_fillNA",
      "title": "Fill NA",
      "topics": [
        "mc_prep_fillNA"
      ]
    },
    {
      "page": "mc_prep_merge",
      "title": "Merge myClim objects",
      "topics": [
        "mc_prep_merge"
      ]
    },
    {
      "page": "mc_prep_meta_locality",
      "title": "Set metadata of localities",
      "topics": [
        "mc_prep_meta_locality"
      ]
    },
    {
      "page": "mc_prep_meta_sensor",
      "title": "Set metadata of sensors",
      "topics": [
        "mc_prep_meta_sensor"
      ]
    },
    {
      "page": "mc_prep_solar_tz",
      "title": "Set solar time offset against UTC time",
      "topics": [
        "mc_prep_solar_tz"
      ]
    },
    {
      "page": "mc_prep_TMSoffsoil",
      "title": "Detection of out-of-soil measurements from TMS logger",
      "topics": [
        "mc_prep_TMSoffsoil"
      ]
    },
    {
      "page": "mc_prep_trim",
      "title": "Trim records from beginning and/or end",
      "topics": [
        "mc_prep_trim"
      ]
    },
    {
      "page": "mc_read_data",
      "title": "Reading files with locality metadata",
      "topics": [
        "mc_read_data"
      ]
    },
    {
      "page": "mc_read_files",
      "title": "Reading files or directories",
      "topics": [
        "mc_read_files"
      ]
    },
    {
      "page": "mc_read_long",
      "title": "Reading data from long data.frame",
      "topics": [
        "mc_read_long"
      ]
    },
    {
      "page": "mc_read_problems",
      "title": "Environment for reading problems",
      "topics": [
        "mc_read_problems"
      ]
    },
    {
      "page": "mc_read_tubedb",
      "title": "Reading data from TubeDB",
      "topics": [
        "mc_read_tubedb"
      ]
    },
    {
      "page": "mc_read_wide",
      "title": "Reading data from wide data.frame",
      "topics": [
        "mc_read_wide"
      ]
    },
    {
      "page": "mc_reshape_long",
      "title": "Export values to long table",
      "topics": [
        "mc_reshape_long"
      ]
    },
    {
      "page": "mc_reshape_wide",
      "title": "Export values to wide table",
      "topics": [
        "mc_reshape_wide"
      ]
    },
    {
      "page": "mc_save",
      "title": "Save myClim object",
      "topics": [
        "mc_save"
      ]
    },
    {
      "page": "mc_save_localities",
      "title": "Save myClim object separated by localities",
      "topics": [
        "mc_save_localities"
      ]
    },
    {
      "page": "mc_Sensor-class",
      "title": "Class for sensor definition",
      "topics": [
        "mc_Sensor",
        "mc_Sensor-class"
      ]
    },
    {
      "page": "mc_SensorMetadata-class",
      "title": "Class for sensor metadata",
      "topics": [
        "mc_SensorMetadata",
        "mc_SensorMetadata-class"
      ]
    },
    {
      "page": "mc_states_delete",
      "title": "Delete sensor states (tags)",
      "topics": [
        "mc_states_delete"
      ]
    },
    {
      "page": "mc_states_from_sensor",
      "title": "Convert a sensor to a state",
      "topics": [
        "mc_states_from_sensor"
      ]
    },
    {
      "page": "mc_states_insert",
      "title": "Insert new sensor states (tags)",
      "topics": [
        "mc_states_insert"
      ]
    },
    {
      "page": "mc_states_join",
      "title": "Create states for join conflicts",
      "topics": [
        "mc_states_join"
      ]
    },
    {
      "page": "mc_states_outlier",
      "title": "Create states for outlying values",
      "topics": [
        "mc_states_outlier"
      ]
    },
    {
      "page": "mc_states_replace",
      "title": "Replace values by states with tag",
      "topics": [
        "mc_states_replace"
      ]
    },
    {
      "page": "mc_states_to_sensor",
      "title": "Convert states to logical (TRUE/FALSE) sensor",
      "topics": [
        "mc_states_to_sensor"
      ]
    },
    {
      "page": "mc_states_update",
      "title": "Update sensor states (tags)",
      "topics": [
        "mc_states_update"
      ]
    },
    {
      "page": "mc_TOMSTDataFormat-class",
      "title": "Class for reading TOMST logger files",
      "topics": [
        "mc_TOMSTDataFormat",
        "mc_TOMSTDataFormat-class"
      ]
    },
    {
      "page": "mc_TOMSTJoinDataFormat-class",
      "title": "Class for reading TMS join files",
      "topics": [
        "mc_TOMSTJoinDataFormat",
        "mc_TOMSTJoinDataFormat-class"
      ]
    },
    {
      "page": "myClimList",
      "title": "Custom list for myClim object",
      "topics": [
        "myClimList"
      ]
    },
    {
      "page": "print.myClimList",
      "title": "Print function for myClim object",
      "topics": [
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      ]
    }
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  "_readme": "https://github.com/ibot-geoecology/myclim/raw/HEAD/README.md",
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  "_vignettes": [
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      "filename": "myclim-demo.html",
      "title": "myClim: microclimatic data in R",
      "engine": "knitr::rmarkdown",
      "headings": [
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        "Pre-Processing",
        "Plotting",
        "Aggregation",
        "Calculation",
        "Standard myClim environmental variables",
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      "created": "2022-03-10 09:22:41",
      "modified": "2023-11-16 13:28:16",
      "commits": 36
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      "headings": [],
      "created": "2023-10-02 12:55:15",
      "modified": "2023-11-09 12:35:42",
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